Rice Leaf Nitrogen Content Estimation Through A Methodological Framework Using Single-Sensor Multispectral Images Manuscript Received: 29 December 2023, Accepted: 18 March 2024, Published: 15 September 2024, ORCiD: 0000-0002-7899-8750, https://doi.org/10.33093/jetap.2024.6.2.6

Main Article Content

Muliady Ang
Lim Tien Tze
Voon Chet Koo
Jeremy Dimitri
Eric Chandra

Abstract

Using non-destructive evaluation tools based on imaging techniques, including single-sensor multispectral cameras, provides a cost-effective solution for optimizing rice nitrogen fertilization through site-specific nutrient management. However, their accuracy and precision have been identified as areas for improvement. This study aims to develop a methodology to improve the accuracy of estimations through field experiments. It utilizes multispectral images captured by MAPIR Survey3W Orange Cyan Near-Infrared and MAPIR Survey3W Red Edge cameras. The Normalized Difference Vegetation Index and Red Edge values derived from these images are correlated with Soil Plant Analysis Development values to assess rice nitrogen levels. A prediction model is then built using the Support Vector Regression algorithm. Findings from the experiments underscore the importance of addressing shadow effects, integrating the dataset on light intensity and image capture time, conducting radiometric calibration, filtering outlier data, employing image segmentation, and utilizing nonlinear Canova tests to enhance estimation accuracy. By configuring the Support Vector Regression model with RBF kernel, gamma set to 1.24, and epsilon set to 0.1, the R2 of the train data and validation data reaches 0.851, and 0.840 respectively. Meanwhile, the R2 of the test data achieves 0.793 with a mean absolute percentage error of 3.49 % and a root mean square error of 1.70. These findings underscore the potential of the proposed methodology to improve the estimation of rice nitrogen status based on single-sensor multispectral images, paving the way for more effective nutrient management strategies in rice cultivation.

Article Details

Section
Articles

References

O. Calicioglu, A. Flammini, S. Bracco, L. Bellù and R. Sims, ‘The Future Challenges of Food and Agriculture: An Integrated Analysis of Trends And Solutions,’ Sustain., vol. 11, no. 1, pp. 1-21, 2019.

D. Laborde, W. Martin, J. Swinnen and R. Vos, ‘COVID-19 Risks to Global Food Security,’ Sci., vol. 369, no. 6503, pp. 500–502, 2020.

H. I. Lin, Y. Y. Yu, F. I. Wen and P. T. Liu, ‘Status of Food Security in East and Southeast Asia and Challenges of Climate Change’, Climate, vol. 10, no. 3, pp. 40, 2022.

S. Yuan et al., ‘Southeast Asia Must Narrow Down The Yield Gap to Continue to be A Major Rice Bowl,’ Nat. Food, vol. 3, no. 3, pp. 217–226, 2022.

D. K. Ray, N. D. Mueller, P. C. West and J. A. Foley, ‘Yield Trends Are Insufficient to Double Global Crop Production by 2050,’ PLoS One, vol. 8, no. 6, pp. e66428, 2013.

B. Singh and V. K. Singh, ‘Fertilizer Management in Rice,’ in B. S. Chauhan, K. Jabran, and G. Mahajan, Rice Production Worldwide, Springer, pp. 217–253, 2017.

B. Wang, G. Zhou, S. Guo, X. Li, J. Yuan and A. Hu, ‘Improving Nitrogen Use Efficiency in Rice for Sustainable Agriculture: Strategies and Future Perspectives,’ Life, vol. 12, no. 10, pp. 1–13, 2022.

P. Chivenge, S. Sharma, M. A. Bunquin and J. Hellin, ‘Improving Nitrogen Use Efficiency—A Key for Sustainable Rice Production Systems,’ Front. Sustain. Food Syst., vol. 5, no. November, pp. 737412, 2021.

A. Dass, V. K. Suri and A. K. Choudhary, ‘Site-specific Nutrient Management Approaches for Enhanced Nutrient-Use Efficiency in Agricultural Crops,’ J. Crop Sci. Technol., vol. 3, no. 3, pp. 1–6, 2014.

Y. P. Wang, Y. C. Chang and Y. Shen, ‘Estimation of Nitrogen Status of Paddy Rice at Vegetative Phase Using Unmanned Aerial Vehicle Based Multispectral Imagery,’ Precis. Agric., vol. 23, no. 1, pp. 1–17, 2022.

H. Zheng, T. Cheng, D. Li, X. Zhou, X. Yao, Y. Tian, W. Cao and Y. Zhu, ‘Evaluation of RGB, Color-Infrared and Multispectral Images Acquired from Unmanned Aerial Systems for The Estimation of Nitrogen Accumulation in Rice,’ Remote Sens., vol. 10, no. 6, pp. 824, 2018.

L. Silva, L. A. Conceiçao, F. C. Lidon and B. Maças, ‘Remote Monitoring of Crop Nitrogen Nutrition to Adjust Crop Models: A Review,’ Agric., vol. 13, no. 4, pp. 835, 2023.

M. Muliady, L. Tien Sze, K. Voon Chet and S. Patra, ‘Classification of Rice Plant Nitrogen Nutrient Status Using k-Nearest Neighbors (k-NN) with Light Intensity Data,’ Indonesia. J. Electr. Eng. Comput. Sci., vol. 22, no. 1, pp. 179-186, 2021.

M. K. Mosleh, Q. K. Hassan and E. H. Chowdhury, ‘Application of Remote Sensors in Mapping Rice Area and Forecasting Its Production: A Review,’ Sensors, vol. 15, no. 1, pp. 769–791, 2015.

K. Yu, F. Li, M. L. Gnyp, Y. Miao, G. Bareth and X. Chen, ‘Remotely Detecting Canopy Nitrogen Concentration and Uptake of Paddy Rice in The Northeast China Plain,’ ISPRS J. Photogramm. Remote Sens., vol. 78, no. April, pp. 102–115, 2013.

W. S. Lee, V. Alchanatis, C. Yang, M. Hirafuji, D. Moshou and C. Li, ‘Sensing Technologies for Precision Specialty Crop Production,’ Comput. Electron. Agric., vol. 74, no. 1, pp. 2–33, 2010.

Y. C. Tian, K. J. Gu, X. Chu, X. Yao, W. X. Cao and Y. Zhu, ‘Comparison of Different Hyperspectral Vegetation Indices for Canopy Leaf Nitrogen Concentration Estimation in Rice,’ Plant Soil, vol. 376, no. 1, pp. 193–209, 2013.

D. Stavrakoudis, D. Katsantonis, K. Kadoglidou, A. Kalaitzidis and I. Z. Gitas, ‘Estimating Rice Agronomic Traits Using Drone-Collected Multispectral Imagery,’ Remote Sens., vol. 11, no. 5, pp. 545, 2019.

X. Soria, A. D. Sappa and A. Akbarinia, ‘Multispectral Single-Sensor RGB-NIR Imaging: New Challenges and Opportunities,’ in Seventh Int. Conf. Image Process. Theory, Tools and Appl., pp. 3–8, 2017.

A. P. A. Gomes, D. M. De Queiroz, D. S. M. Valente, F. D. A. D. C. Pinto and J. T. F. Rosas, ‘Comparing A Single-Sensor Camera with a Multisensor Camera for Monitoring Coffee Crop Using Unmanned Aerial Vehicles,' Precisi. Agric., vol. 4430, pp. 87–97, 2021.

A. Chlingaryan, S. Sukkarieh and B. Whelan, ‘Machine Learning Approaches for Crop Yield Prediction and Nitrogen Status Estimation in Precision Agriculture: A Review,’ Comput. Electron. Agric., vol. 151, no. May, pp. 61–69, 2018.

MAPIR, ‘OCN Filter Improves Results Compared to RGN Filter’. [Online] Available: https://www.mapir.camera/pages/ocn-filter-improves-contrast-compared-to-rgn-filter.

Y. Liu, X. Zhu, X. He, C. Li, T. Chang, S. Chang, H. Zhang and Y. Zhang, ‘Scheduling of Nitrogen Fertilizer Topdressing During Panicle Differentiation to Improve Grain Yield of Rice With A Long Growth Duration,’ Sci. Rep., vol. 10, no. 1, pp. 1–10, 15197, 2020.

A. A. Aguilar, ‘Machine Learning and Big Data Techniques for Satellite-Based Rice Phenology Monitoring,’ MPhil. Thesis, the University of Manchester, 2019.

Z. Yuan, Q. Cao, K. Zhang, S. T. Ata-Ul-Karim, Y. Tian, Y. Zhu, W. Cao and X. Liu, ‘Optimal Leaf Positions for SPAD Meter Measurement in Rice,’ Front. Plant Sci., vol. 7, pp. 1–10, 00719, 2016.

MAPIR, ‘Calibration Target’. [Online]. Available: https://mapir.gitbook.io/mapir-camera-control-mcc/calibration-targets.

S. Seo, ‘A Review and Comparison of Methods for Detecting Outliers in Univariate Data Sets,’ MSc Thesis, University of Pittsburgh, 2006.

L. Wang, Y. Duan, L. Zhang, T. U. Rehman, D. Ma and J. Jin, ‘Precise Estimation of NDVI With A Simple NIR Sensitive RGB Camera and Machine Learning Methods for Corn Plants,’ Sensors, vol. 20, no. 11, pp. 1–15, 2020.

T. Liu, R. Li, X. Zhong, M. Jiang, X. Jin, P. Zhou, S. Liu, C. Sun and W. Guo, ‘Estimates of Rice Lodging Using Indices Derived from UAV Visible and Thermal Infrared Images,’ Agric. For. Meteorol., vol. 252, pp. 144–154, 2018.

N. N. C. Ya, L. S. Lee, M. R. Ismail, S. M. Razali, N. A. Roslin and M. H. Omar, ‘Development of Rice Growth Map Using The Advanced Remote Sensing Techniques,’ Proc. 2019 Int. Conf. Comput. Drone Appl., vol. 2018, pp. 23–28, 2019.

J. Xue and B. Su, ‘Significant Remote Sensing Vegetation Indices: A Review of Developments and Applications,’ J. Sensors, vol. 2017, pp. 1353691, 2017.

H. Lee, J. Wang and B. Leblon, ‘Using Linear Regression, Random Forests, and Support Vector Machine with Unmanned Aerial Vehicle Multispectral Images to Predict Canopy Nitrogen Weight in Corn,’ Remote Sens., vol. 12, no. 13, pp. 2071, 2020.

K. K. Paidipati, C. Chesneau, B. M. Nayana, K. R. Kumar, K. Polisetty and C. Kurangi, ‘Prediction of Rice Cultivation in India—Support Vector Regression Approach with Various Kernels for Non-Linear Patterns,’ AgriEngineering, vol. 3, no. 2, pp. 182–198, 2021.

L. Wang, X. Zhou, X. Zhu and W. Guo, ‘Estimation of Leaf Nitrogen Concentration in Wheat using The MK-SVR Algorithm and Satellite Remote Sensing Data,’ Comput. Electron. Agric., vol. 140, pp. 327–337, 2017.

L. Wang, Q. Chang, J. Yang, X. Zhang and F. Li, ‘Estimation of Paddy Rice Leaf Area Index Using Machine Learning Methods Based on Hyperspectral Data from Multi-Year Experiments,’ PLoS One, vol. 13, no. 12, pp. 1–16, 2018.

M. Ghosh, D. K. Swain, M. K. Jha, V. K. Tewari and A. Bohra, ‘Optimizing Chlorophyll Meter (SPAD) Reading to Allow Efficient Nitrogen Use in Rice And Wheat Under Rice-Wheat Cropping System in Eastern India,’ Plant Prod. Sci., vol. 23, no. 3, pp. 270–285, 2020.

S. Xu, X. Xu, Q. Zhu, Y. Meng, G. Yang, H. Feng, M. Yang, Q. Zhu, H. Xue and B. Wang, ‘Monitoring Leaf Nitrogen Content in Rice Based on Information Fusion of Multi-Sensor Imagery from UAV,’ Precis. Agric., vol. 24, no. 6, pp. 2327–2349, 2023.

W. Wang, Y. Wu, Q. Zhang, H. Zheng, X. Yao, Y. Zhu, W. Cao and T. Cheng, ‘AAVI: A Novel Approach to Estimating Leaf Nitrogen Concentration in Rice from Unmanned Aerial Vehicle Multispectral Imagery at Early and Middle Growth Stages,’ IEEE J. Sel. Top. Appl. Earth Obs. Remote Sens., vol. 14, pp. 6716–6728, 2021.